PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.004G047500.1
Common NamePOPTR_0004s04700g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ERF
Protein Properties Length: 177aa    MW: 18921.4 Da    PI: 10.1739
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.004G047500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2643.1e-20858256
                 AP2  2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkklege 56
                        +y+GVr ++ +gr++AeIrd ++    ++r++lg+f+t+eeAa a++ a+++l+g+
  Potri.004G047500.1  8 HYRGVRKRP-WGRYAAEIRDpWK----KTRVWLGTFDTPEEAALAYDGAARSLRGA 58
                        69*******.**********883....5*************************995 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.1E-13857IPR001471AP2/ERF domain
SuperFamilySSF541713.4E-22865IPR016177DNA-binding domain
PROSITE profilePS5103222.721865IPR001471AP2/ERF domain
SMARTSM003807.4E-36871IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.1E-32865IPR001471AP2/ERF domain
CDDcd000181.29E-29865No hitNo description
PRINTSPR003675.1E-11920IPR001471AP2/ERF domain
PRINTSPR003675.1E-113147IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    Send to blast
MASSREGHYR GVRKRPWGRY AAEIRDPWKK TRVWLGTFDT PEEAALAYDG AARSLRGAKA  60
KTNFPSPPST SGLSLDLNLP SDPHHHHLRW GSSPHVGSHR FGGLGEFLQT GVVFKEMNFN  120
ATEAAAASGP VVKIEGPGVG AVAGAPVPEN VAPASFLGMV RRGLPIDLNE PPPLWL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3gcc_A2e-21865563ATERF1
2gcc_A2e-21865563ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002305780.11e-125ERF domain protein 12
SwissprotQ94ID65e-54ERF81_ARATH; Ethylene-responsive transcription factor 12
TrEMBLB9H2R81e-125B9H2R8_POPTR; ERF domain protein 12
STRINGPOPTR_0004s04700.11e-125(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33034189
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28360.14e-50ERF domain protein 12